***************** ``k-seq`` package ***************** .. note:: This API document is on working process and is frequently updated ``k-seq`` package contains following modules: .. toctree:: :maxdepth: 1 k_seq.data k_seq.model k_seq.estimate k_seq.utility .. .. data .. =================== .. .. k\_seq.data.preprocess module .. ------------------------------ .. .. .. automodule:: k_seq.data.preprocess .. :members: .. :undoc-members: .. :show-inheritance: .. .. .. k\_seq.data.filters module .. -------------------------- .. .. .. automodule:: k_seq.data.filters .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.data.grouper module .. -------------------------- .. .. .. automodule:: k_seq.data.grouper .. :members: .. :undoc-members: .. :show-inheritance: .. .. .. k\_seq.data.variant\_pool module .. ---------------------------- .. .. .. automodule:: k_seq.data.variant_pool .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.data.seq\_data module .. ----------------------------- .. .. .. automodule:: k_seq.data.seq_data .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.data.seq\_data\_analyzer module .. ---------------------------------- .. .. .. automodule:: k_seq.data.seq_data_analyzer .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.data.simu module .. ----------------------- .. .. .. automodule:: k_seq.data.simu .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.data.transform module .. ---------------------------- .. .. .. automodule:: k_seq.data.transform .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.data.visualzation module .. ----------------------------- .. .. .. automodule:: k_seq.data.visualzation .. :members: .. :undoc-members: .. :show-inheritance: .. .. .. .. model .. ==================== .. .. k\_seq.model.count module .. ------------------------- .. .. .. automodule:: k_seq.model.count .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.model.kinetic module .. --------------------------- .. .. .. automodule:: k_seq.model.kinetic .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.model.pool module .. ------------------------ .. .. .. automodule:: k_seq.model.pool .. :members: .. :undoc-members: .. :show-inheritance: .. .. .. .. estimate .. ======================== .. .. .. k\_seq.estimator.least\_squares module .. ------------------------------------- .. .. .. automodule:: k_seq.estimator.least_squares .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.estimator.least\_squares\_batch module .. ----------------------------------------- .. .. .. automodule:: k_seq.estimator.least_squares_batch .. :members: .. :undoc-members: .. :show-inheritance: .. .. .. k\_seq.estimator.models module .. ------------------------------ .. .. .. automodule:: k_seq.estimator.models .. :members: .. :undoc-members: .. :show-inheritance: .. .. k\_seq.estimator.visualizer .. ---------------------------------- .. .. .. automodule:: k_seq.estimator.visualizer .. :members: .. :undoc-members: .. :show-inheritance: .. .. .. utility .. =======================