k-seq
: a package for kinetic measurements with high throughput sequencing¶
Welcome to the documentation for k-seq
, a python package to analyze the data from k-Seq (a kinetic assay using
high throughput sequencing). It contains the function to process the FASTQ reads to a count table, preprocess
count table, quantify the extend of reaction, and fitting the data into kinetic model with bootstrapping to quantify
the uncertainty.
Please check Installation to set up the environment to run k-seq
package. For quick start, check
Getting Started Tutorial.
Table of content¶
API reference¶
Contact¶
For any question and issues: issue report or Yuning Shen (yuningshen@ucsb.edu)